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BIO 397- Advanced Bioinformatics

Announcements

 16 January 2019 - This is the website for the BIO 397 (Advanced Bioinformatics) class facilitated by Jan Michael Yap. Announcements and files pertinent to the class will be posted here.


DatesTopic/Activity Materials
01/16/2019Overview
01/23/2019Introduction to Linux CLI and ScriptingLinux CLI:
Site 1
Site 2

Scripting:
Site 1
Site 2
Site 3
Sample Scripts
 01/30/2019 
 Introduction to Programming in RR:
Ebook
Site 1
Site 2
02/06/2019
02/13/2019
Phylogenetic AnalysisSample Data
 
02/13/2019
02/27/2019
PROBLEM SET 1
02/20/2019
02/27/2019
Sequence Assembly
Sample Data
02/27/2019
 03/13/2019 
PROBLEM SET 2
03/06/2019
 03/13/2019 
QTL Mapping
R/qtl Tutorials
03/13/2019
03/27/2019
 PROBLEM SET 3
03/20/2019
 03/27/2019 
 SNP Calling 
03/27/2019
04/10/2019
 PROBLEM SET 4
04/03/2019
04/10/2019
Transcriptomic Data Analysis  Differential Analysis Sample Codes and Tutorials:

Microarray:
Part 1
Part 2

RNA-seq:
Link

Gene Coexpression Tutorials:
WGCNA
04/10/2019
 04/24/2019 
PROBLEM SET 5
05/08/2019PROJECT PRESENTATIONSGuidelines
  • Syllabus can be downloaded here.
  • Copy of the 2012 Code of Student Conduct can be downloaded here.