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MBB 291 - Bioinformatics for Genomics and Transcriptomics

Announcements

 05 August 2017 - This is the website for the MBB 291 (Bioinformatics for Genomics and Transcriptomics) class facilitated by Jan Michael Yap. Announcements and files pertinent to the class will be posted here.


DatesTopic/Activity Materials
08/05/2017Overview
08/12/2017Introduction to Linux CLI and ScriptingLinux CLI:
Site 1
Site 2

Scripting:
Site 1
Site 2
Site 3
Sample Scripts
 08/19/2017 
 Introduction to Programming in RR:
Ebook
Site 1
Site 2
08/19/2017
09/02/2017
PROBLEM SET 1Questionnaire
08/26/2017
09/02/2017
Phylogenetic AnalysisSample Data
09/02/2017
09/16/2017
PROBLEM SET 2
09/09/2017
09/16/2017
09/23/2017
Sequence Assembly

09/23/2017
 10/07/2017 
PROBLEM SET 3 
09/30/2017
 10/07/2017 
SNP Calling
 
10/07/2017
10/21/2017
 PROBLEM SET 4
10/14/2017
 10/21/2017 
 QTL Mapping 
10/21/2017
11/04/2017
 PROBLEM SET 5
11/11/2017
11/18/2017
Transcriptomic Data Analysis  Differential Analysis Sample Codes and Tutorials:
limma
edgeR

Gene Coexpression Tutorials:
WGCNA
11/18/2017
 12/02/2017 
PROBLEM SET 6
12/02/2017PROJECT PRESENTATION
  • Syllabus can be downloaded here.