CS 175 - Introduction to Bioinformatics for Genomics and Transcriptomics

Announcements

12 August 2018 - From the Office of the Chancellor: "UP Diliman Meteorology forecasts more heavy rains today and tomorrow. As a precautionary measure, work and classes are suspended tomorrow, Aug. 13, 2018."

As such, we will have our first lecture class on 03 September 2018 and the schedule of lectures for the semester will be adjusted accordingly.

Stay safe, and please be guided accordingly.

06 August 2018 - This is the website for the CS 175 (Introduction to Bioinformatics for Genomics and Transcriptomics) class facilitated by Jan Michael Yap. Announcements and files pertinent to the class will be posted here.

Dates	Topic/Activity	Materials
08/06/2018	Overview	Materials: Linux CLI: Site 1 Site 2 Scripting: Site 1 Site 2 Site 3 Sample Scripts R: Ebook Site 1 Site 2 Diagnostics: Bio Students Non-Bio Students
09/03/2018	Pairwise Sequence Alignment	Sample Data
09/03/2018	Multiple Sequence Alignment
09/10/2018	Sequence Database Searching: BLAST	BLAST Guide
09/10/2018 09/24/2018	PROBLEM SET 1
09/17/2018	Distance-Based Phylogenetic Tree Reconstruction
09/17/2018 09/24/2018	Character-Based Phylogenetic Tree Reconstruction
09/24/2018 10/01/2018	Maximum Likelihood Phylogenetic Tree Reconstruction
10/08/2018	DNA Barcoding
10/08/2018 10/22/2018	PROBLEM SET 2
10/15/2018	Reference Guided Sequence Assembly
10/22/2018 10/29/2018	De Novo Sequence Assembly
10/29/2018 11/12/2018	PROBLEM SET 3
11/05/2018 11/12/2018	Differential Gene Expression Analysis	Microarray: Part 1 Part 2 RNA-seq: Link
11/19/2018	Coexpression Analysis	WGCNA Tutorial
11/19/2018 12/03/2018	PROBLEM SET 4
12/03/2018	PROJECT PRESENTATIONS

Syllabus can be downloaded here.
Copy of the 2012 Code of Student Conduct can be downloaded here.