Announcements 07 August 2017 - This is the website for the CS 175 (Introduction to Bioinformatics for Genomics and Transcriptomics) class facilitated by Jan Michael Yap. Announcements and files pertinent to the class will be posted here. | | Dates | Topic/Activity | Materials | | 08/07/2017 | Overview |
| 09/04/2017
| Introduction to Linux CLI and Scripting (Bio)
DNA, RNA, and the Genome (Non-Bio)
Central Dogma of Biology (Non-Bio) | Linux CLI:
Site 1
Site 2
Scripting:
Site 1
Site 2
Site 3
Sample Scripts | 09/11/2017
| Introduction to Programming in R (Bio)
Molecular Evolution (Non-Bio)
Sequencing and Measuring Gene Expression (Non-Bio) | R:
Ebook
Site 1
Site 2 | 09/11/2017
09/25/2017 | PROBLEM SET 1 |
| 09/18/2017
| Sequence Alignment | Sample Data | | 09/25/2017 | Sequence Database Searching: BLAST | BLAST Guides | | 10/09/2017 | DNA Barcoding | | 10/09/2017
10/23/2017 | PROBLEM SET 2 |
| | 10/16/2017 | Distance-Based Phylogenetic Tree Reconstruction | | | 10/23/2017 | Character-Based Phylogenetic Tree Reconstruction | | 10/23/2017
11/06/2017 | PROBLEM SET 3 | | | 11/06/2017 | Sequence Assembly | | | 11/13/2017 | Annotations | | 11/13/2017
11/27/2017 | PROBLEM SET 4 |
| | 11/20/2017 | Differential Gene Expression Analysis | Sample R script using limma | | 11/27/2017 | Coexpression Analysis | WGCNA Tutorial | 11/27/2017
12/11/2017 | PROBLEM SET 5 |
| 12/04/2017
| Pipelining |
| | 12/11/2017 | PROJECT PRESENTATIONS |
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- Syllabus can be downloaded here.
- Copy of the 2012 Code of Student Conduct can be downloaded here.
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